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Showing 41-50 of 309 paper
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Stoebel,2009ExperimentsGene regulationE. coli K-12 DMS1684 DMS1688 DMS1692 DMS1711 DMS1717 DMS1725 DMS1726 DMS1727 DMS1735 DMS1737 DMS1739 DMS1741 DMS1743 DMS1745 DMS1747 DMS1749 DMS1751 DMS1753 DMS1766 DMS1782 DMS1784 DMS1786 DMS1788 DMS1790 DMS1792 DMS1794 DMS1796 SlidesCells for RNA preparation were grown in MOPS minimal medium (0.2% glucose) + 0.3M NaCl. Charles J. Dorman
Ma,2009Experimentsbiofilm formation E. coli K-12 BW25113 Affymetrix E. coli Antisense Genome Array Partial whole-transcriptome profiles were completed to determine the impact of OmpA on biofilm formation.Thomas K. Wood
Wang,2009ExperimentsCP4-57 prophage excision E. coli K-12 BW25113 Affymetrix E. coli Genome 2.0 Array A whole-transcriptome study was completed to understand how hosts control the gene expression of captured prophage using the CP4-57 cryptic phage as an example.Thomas K. Wood
Peters,2009Experimentsintragenic and stable RNA transcription E. coli K-12 MG1655 Escherichia coli K-12 MG1655 tiling array (Nimblegen Design) This is a chip-chip dataset. We are in the process of applying our algorithms to it. Robert Landick
Khankal,2009ExperimentsCRP* expression in Escherichia coli E. coli W3110 PlasmidPatrick C Cirino
Ito,2009Experimentsantibiotic resistance; Mature Biofilms E. coli K-12 MG1655 (pOX38Km) Affymetrix E. coli Antisense Genome Array A global gene expression analysis was performed to investigate physiological differences between the outside and the inside of biofilms.Satoshi Okabe
Sinha,2009ExperimentsCRP-S regulon; competence regulation E. coli K-12 BW25113 University of Alberta E. coli 3x6K microarray slides Sxy is required for the induction of competence genes in H. influenza. To identify its activity in E. coli, Sxy gene expression in cells carrying pEcsxy and empty control cells was completed. Induction of Sxy caused 81 genes to be up-regulated at least fourfold and 41 genes to be repressed at least fourfold.Sunita Sinha
Graham,2009ExperimentsZinc Depletion E. coli K-12 MG1655 MWG E. coli K12 Array The data represents a genome-wide analysis of Zn2+ depletion of cells grown in continuous culture. A total of 21 genes displayed a greater than 2-fold increase in mRNA levels, 13 displayed a decrease. Robert K. Poole
Thomassen,2009ExperimentsHigh-Density Oligonucleotide Bacterial Tiling Microarrays E. coli K-12 MG1655 Custom made Escherichia coli K12 MG1655 tiling array Torbjørn Rognes
Hong,2009ExperimentsDNA damage responsesE. coli RFM443Oligo 6K microarray chips (Genomictree, Korea)Their microarray data was combined with other microarray studies on DNA damage response. Man Bock Gu