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Showing 61-70 of 309 paper
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Kim,2009ExperimentsToxin-antitoxin systems in Escherichia coliMG1655 versus ?5, BW25113 versus BW25113 E. coli GeneChip Genome 2.0 array (Affymetrix, P/N 511302)A gene was considered differentially expressed when the P-value for comparing two chips was lower than 0.05 and when the expression ratio was higher than the standard deviation for all of the E. coli K-12 genes.Thomas K. Wood
Mooney,2009ExperimentsRegulator trafficking E. coli K-12 MG1655 Escherichia coli K-12 MG1655 tiling array (Nimblegen Design) Robert Landick
Dong,2009ExperimentsRpoS in global gene expressionE. coli K-12 MG1655 vs rpoS deletion mutantAffymetrix Antisense E. coli ArrayFold value is given as the average of triplicate experiments.Herb E. Schellhorn
Shabala,2009Experimentsion transport; osmotic pressureE. coli Frag1E. coli version 2 chip (Affymetrix, Santa Clara)E. coli was grown until OD540=0.6. Iso-osmotic concentrations of NaCl or sucrose was added to create a hyper-osmotic stress of 2.7 Os Kg-1.Sergey Shabala
Baek,2009Experimentsmethyl methanesulfonate E. coli K-12 W3110 TwinChip_EColi_6k A transcriptome analysis of adaptive responses to methyl-methanesulfonate in wild-type and ada mutant strains was completed.Sang Yup Lee
Kohanski,2008Experimentsantibiotic-mediated cell death E. coli K-12 BW25113 Affymetrix E. coli Antisense2 genome arrays Gene expression microarrays were used to compare gene expression profiles of wildtype (MG1655) E. coli treated with gentamicin to expression profiles following treatment with spectinomycin.James J. Collins
Lemuth,2008ExperimentsMetabolic Changes; transcription E. coli K-12 W3110 (DSM 5911) MWG E. coli K-12 V2 Oligo set The supplemental data contains tables showing the expression levels of up- and down-regulated genes. However, no fold or ratios were provided. EcoArray does not alter the data.M. Siemann-Herzberg
Soini,2008ExperimentsNorvaline; O2 down-shift E. coli K-12 W3110 Affymetrix E. coli Genome 2.0 array For control fermentation sample was taken 15 minutes before oxygen downshift.Peter Neubauer
Lee,2008ExperimentsIndole cell signaling E. coli K-12 BW25113 Affymetrix E. coli Genechip Genome 2.0 Array; E. coli Genechip antisense genome array A whole-transciptome study was completed to show that indole cell signaling occurs primarily at low temperatures in E. coli.Thomas K Wood
Helbig,2008ExperimentsCadmium toxicity E. coli K-12 W3110 Ocimum; OciChip E. coli K-12 V2 arrays Dietrich H. Nies