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Showing 61-70 of 309 paper
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Asakura,2009Experimentscell death; restriction–modification gene complex E. coli K-12 BW25113; MG1655 Affymetrix E. coli Antisense Genome Array A transcriptome analysis was completed on r+ and r- cells; r = restriction–modification gene complex.Yoko Asakura
Kim,2010Experimentstoxin/antitoxin pair; MqsR/MqsA E. coli K-12 BW25113Affymetrix E. coli Antisense Genome Array Three whole-transcriptome studies were completed to identify genes in E. coli K-12 that are regulated by the MqsR/MqsA toxin/antitoxin pair.Thomas K. Wood
Ma,2009Experimentsbiofilm formation E. coli K-12 BW25113 Affymetrix E. coli Antisense Genome Array Partial whole-transcriptome profiles were completed to determine the impact of OmpA on biofilm formation.Thomas K. Wood
Lee,2010Experimentscis-dichloroethylene; tress-related proteins E. coli K-12 BW25113 Affymetrix E. coli Antisense Genome Array; Affymetrix E. coli Genome 2.0 Array; A whole-transcriptome study was completed to study and characterize how E. coli copes with the stress associated with remediation. Thomas K. Wood
Johansson,2006ExperimentsCarbon-limitation; Phosphate-limitationE. coli K-12 W3110Affymetrix E. coli antisense genome arrays AS v2This publication focuses on transcriptome alterations as a result of production of shikimic acid in carbon and phosphate-limited conditions by comparing WT W3110 to its derivative (W3110 aroL deletion and aroF over expression). Publication schematically reports changes in amino acid metabolism genes.Louise Johansson
Kohanski,2008Experimentsantibiotic-mediated cell death E. coli K-12 BW25113 Affymetrix E. coli Antisense2 genome arrays Gene expression microarrays were used to compare gene expression profiles of wildtype (MG1655) E. coli treated with gentamicin to expression profiles following treatment with spectinomycin.James J. Collins
Zhang,2008Experimentscolanic acid and biofilm formation E. coli K12 MG1655; E. coli K12 BW25113 Affymetrix E. coli Genechip 2.0 Array The transcriptome analysis showed that deletion of the yncC gene up-regulated 30 genes and down-regulated 10 genes.Thomas K. Wood
Gunasekera,2008Experimentsosmotic stress; heat stress E. coli K-12 NCM3722Affymetrix E. coli Genechip 2.0 Array The cross-regulation of osmotic and heat stress responses were probed on the E.coli K-12 transcriptome by characterizing the effects of external osmolarity and temperature.Oleg Paliy
Kim,2010Experimentspersister cell formation E. coli K-12 BW25113 Affymetrix E. coli GeneChip Genome 2.0 array The microarray analysis was performed using planktonic cells of E. coli K-12 BW25113 hfq (deletion mutant) vs. BW25113 wild-type cells. The whole-transcriptome study showed that Hfq, a small RNA chaperone, induces transport-related genes, outer membrane protein-related genes, and proteases. Thomas K. Wood
Lee,2008ExperimentsIndole cell signaling E. coli K-12 BW25113 Affymetrix E. coli Genechip Genome 2.0 Array; E. coli Genechip antisense genome array A whole-transciptome study was completed to show that indole cell signaling occurs primarily at low temperatures in E. coli.Thomas K Wood