Microarray Experiment Search Results for rimK

16 total

Reference	Variable	Value    fold ratio ln log2	Experiments	Contact
Stoebel,2009	rpoS+2 WT evolved strain	2.025	Gene_3, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+3 WT evolved strain	2.019	Gene_4, Exp Data	Charles J. Dorman
Stoebel,2009	rpoS+4 wt evolved strain	2.002	Gene_5, Exp Data	Charles J. Dorman
Domka,2007	24 hr biofilm vs 15 hr biofilm	5.3	Growth_6, Exp Data	Thomas K. Wood
Smith,2007	ygfY yjaG	3.273	Gene_1, Exp Data	Harold E. Smith
Smith,2007	yjfM yheL yagJ yjjU ybjX	-3.273	Gene_2, Exp Data	Harold E. Smith
Domka,2006	bssR	7.295	Gene_1, Exp Data	Thomas K. Wood
Ren,2004	furanones	2.5	Chemical_2, Exp Data	Thomas K. Wood
Li,2003	rnpA	10.9	Gene_1, Exp Data	Sidney Altman
Li,2003	rnpA	104.2	Gene_2, Exp Data	Sidney Altman
Li,2003	rnpA	104.2	Gene_4, Exp Data	Sidney Altman
Salmon,2003	aerobic vs anaerobic	2.19	Growth_1, Exp Data	G. Wesley Hatfield
Salmon,2003	fnr	-6.16	Gene_2, Exp Data	G. Wesley Hatfield
Pomposiello,2001	marA	5.5	Gene_4, Exp Data	Bruce Demple
Pomposiello,2001	soxS	2	Gene_3, Exp Data	Bruce Demple
Barbosa,2000	marA	2.3	Gene_1, Exp Data	Stuart Levy

Experimental Details

Stoebel,2009 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 3 Show Data rpoS+2 WT evolved strain rpoS+2 4 Show Data rpoS+3 WT evolved strain rpoS+3 5 Show Data rpoS+4 wt evolved strain rpoS+4

Domka,2007 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 6 Show Data 24 hr biofilm vs 15 hr biofilm 15 hr biofilm steady 24 and 15 hour RNA from biofilm cultures.

Smith,2007 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data ygfY, yjaG plasmid(over expression ) 2 Show Data yjfM, yheL, yagJ, yjjU, ybjX plasmid(over expression )

Domka,2006 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data bssR KO LB w/ glucose, glass wool (biofilm cells processed only for array analysis), compared to WT

Ren,2004 All Experiments Top chemical experimental details: Exp ID Exp Data Name Concentration Time added Duration Comments 2 Show Data furanones 60ug/ml initially OD600=0.9 grown in LB +0.5% glucose, = amt solvent added to ctrl sample

Li,2003 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data rnpA A49 to G(temperature sensitive, point mutation) At OD600=0.25 culture was shifted from 30C to 42C. 0min time point. 2 Show Data rnpA A49 to G(temperature sensitive) RNA was extracted 15 min post shift from 30C to 42C. 4 Show Data rnpA A49 to G(temperature sensitive) RNA extracted at 15 min post 42C shift was compared to RNA extracted at 45 min post 42C shift.

Salmon,2003 All Experiments Top growth experimental details: Exp ID Exp Data Name Variable Shift time Duration Comments 1 Show Data aerobic vs anaerobic anaerobic steady MC41OO(WT) gene experimental details: Exp ID Exp Data Gene name Allele Comments 2 Show Data fnr deletion fnr mutant was compared to MC4100(WT) in anaerobic conditions.

Pomposiello,2001 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 4 Show Data marA GC4468(deletion of marRAB) induced by IPTG 3 Show Data soxS DJ901(deletion of soxRS) induced by IPTG

Barbosa,2000 All Experiments Top gene experimental details: Exp ID Exp Data Gene name Allele Comments 1 Show Data marA marCRAB::kan, plasmid WT marCAB and mutant marR(constitutive)