GenePage for the gapC' pseudogene of Escherichia coli K-12

Primary Gene Name: gapC'
EcoGene Accession Number: EG12103
K-12 Gene Accession Number: ECK1409
MG1655 Gene Identifier: b4493, b1417, b1416
Gene Name Mnemonic: Glyceraldehyde phosphate dehydrogenase
Alternate Gene Symbols: None
Description: Pseudogene reconstruction, GAP dehydrogenase; glyceraldehyde 3-phosphate dehydrogenase C
  # bp Upstream # bp Downstream
MW: 35649.59 ---------333 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 1489713
Left Intergenic Region

Name: aldA_gapC

Length: 41 bp gap

Orientation: Convergent

Left_end: 1489672

Right_end: 1489712

Centisome: 32.09

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed gapC pseudogene protein sequence was translated from the DNA:

complement(join(1489713..1489964,1489964..1490713))


Counterclockwise
Minute or Centisome (%) = 32.09
Right End: 1490713
Right Intergenic Region

Name: gapC_cybB

Length: 188 bp gap

Orientation: Divergent

Left_end: 1490714

Right_end: 1490901

Centisome: 32.12

A stop codon at codon 39 is changed to a Lys; a frameshift at codon 249 was reconstructed. An intact 333 aa GapC protein is Z2304 from O157:H7.

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BamHI EcoRI HindIII