GenePage for the gatR' pseudogene of Escherichia coli K-12

Primary Gene Name: gatR'
EcoGene Accession Number: EG12162
K-12 Gene Accession Number: ECK2083
MG1655 Gene Identifier: b4498, b2090, b2087
Gene Name Mnemonic: Galactitol
Alternate Gene Symbols: None
Description: Pseudogene reconstruction, repressor for gat operon; interrupted by IS3E
  # bp Upstream # bp Downstream
MW: 27726.90 ---------257 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 2169693
Left Intergenic Region

Name: yegS_gatR

Length: 81 bp gap

Orientation: Convergent

Left_end: 2169612

Right_end: 2169692

Centisome: 46.74

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed IS-interrupted gatR pseudogene protein sequence was translated from the DNA:

complement(join(2169693..2170167,2171429..2171727))


Counterclockwise
Minute or Centisome (%) = 46.74
Right End: 2171727
Right Intergenic Region

Name: gatR_insE5

Length: 68 bp gap

Orientation: Divergent

Left_end: 2170168

Right_end: 2170235

Centisome: 46.75

IS3E inserted at codon 100 and made a 3 bp target site duplication GTC. Intact version present in other strains, including E. coli 06 (NCBI gi 26108868). ATG at codon -2 is not conserved.

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BamHI EcoRI HindIII