GenePage for the agaW' pseudogene of Escherichia coli K-12

Primary Gene Name: agaW'
EcoGene Accession Number: EG12765
K-12 Gene Accession Number: ECK3122
MG1655 Gene Identifier: b3134
Gene Name Mnemonic: Acetylgalactosamine
Alternate Gene Symbols: yhaZ
Description: Pseudogene, N-terminal fragment, PTS system EIICGalNAc; N-acetylgalactosamine-specific
  # bp Upstream # bp Downstream
MW: 12799.36 ---------125 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 3280701
Left Intergenic Region

Name: agaV_agaW

Length: 10 bp gap

Orientation: Codirectional+

Left_end: 3280691

Right_end: 3280700

Centisome: 70.68

Genomic Address
Clockwise
Minute or Centisome (%) = 70.68
Right End: 3281075
Right Intergenic Region

Name: agaW_agaA

Length: 5 bp overlap

Orientation: Codirectional+

Left_end: 3281071

Right_end: 3281075

Centisome: 70.69

Remnant of aga operon deletion that removed agaEF and parts of agaW and agaA. 2304 bp deleted, as compared to O157:H7 and E. coli C, as originally noted by Brinkkotter et al. (2000). Deletion was presumably formed by recombination between two perfect six bp direct repeats, GCGACC. A complete AgaW sequence is in E. coli O157:H7 as Z4486.

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BamHI EcoRI HindIII